YangJAT/HCA

Hierarchical Cell Annotation

HCA (Hierarchical Cell Annotation)

Abstract

This tutorial shows how to use HCA to identify cells with usual ‘gene set’ (i.e. gene signatures) in single-cell RNA-seq data.

How to install this R package:

##You need to install iCNA R package first:
devtools::install_github('Liuzhicheng048/iCNA')
##Then you can install this package:
devtools::install_github('YangJAT/HCA')

Note: this package was built on seurat V4 and will be updated to support V5 in the future.