/micaopen

Open Scripts / Pipelines from the Multimodal Imaging and Connectome Analysis Lab

Primary LanguageMATLAB

micaopen

Open Software from the MICALAB and some useful tools:

MPC - tool for microstructure profile covariance (Paquola et al., 2018 bioRxiv)

autism_hierarchy - videos of step wise functional connectivity within a hierarchical framework (Hong et al., under review)

dcm_sorter - python code to sort a dicom directory into subfolders

diffusion_map_embedding - code to implement diffusion map embedding (Vos de Wael et al., 2018 PNAS)

mica_powertools - extra scripts from the MICA lab

surfstat_chicago - Contains Keith Worsley's SurfStat (Chicago version) for surface- and volume-based statistical analysis and visualization. Requires matlab.

surfstat_addons - some useful functions from the MICALAB that extend the basic surfstat functionalities

surfstat_tutorial - tutorial slides and demo dataset to learn how to use surfstat