YasCoMa

app_web_testCogManager

This is a site for implementation, application and management of cognitive tests.

basic_programs_in_python

Basic programs in Python to guide new people in this language

caliscoma_pipeline

Pipeline for drug ranking based on computed pathway scores of disease and healthy samples

dashboard-srag-mobility

Dashboard for analysis of Severe Acute Respiratory Syndrome (srag) dataset and Google's community mobility change (mobility) in Streamlit

dscrank

This is an implementation of the method DSCrank for selecting and ranking semantic datasets from catalogues, executing mapping of their data items, delivering this associations to be voted by a crowd (part implemented for web: http://ypublish.info/crowdsourcing-validation/, but configured in the app) and as a final result it does the integration and generates a new version of the source dataset to be interlinked.

hppidiscovery

Scientific workflow to augment, predict and evaluate host-pathogen protein-protein interactions

mutasig

Tensorflow model to classify mutational signatures on Cancer Single Nucleotide Variation files.

ppi_validation_process

Python pipelines to filter positive predicted protein interactions according to two criteria: (i) association rules of cellular components according to gold standard PPI data from HINT and (ii) text mining on scientific papers published on Pubmed extracting sentences where the proteins in the PPIs appeared in an interaction context

predprin

Scientific workflow to predict protein-protein interactions based in a combined analysis of multiple protein characteristics.

screendop

Pipeline that performs a screening of disease outcome prediction evaluations following two strategy options: graph kernel based combining PPI + gene expression, and the other based on GSEA enriched pathway scores.

YasCoMa/caliscoma_pipeline

Pipeline for drug ranking based on computed pathway scores of disease and healthy samples

YasCoMa/predprin

Scientific workflow to predict protein-protein interactions based in a combined analysis of multiple protein characteristics.

YasCoMa/dashboard-srag-mobility

Dashboard for analysis of Severe Acute Respiratory Syndrome (srag) dataset and Google's community mobility change (mobility) in Streamlit

YasCoMa/hppidiscovery

Scientific workflow to augment, predict and evaluate host-pathogen protein-protein interactions

YasCoMa/PipeAggregationInfo

Pipeline to check correlation among proteins in interactomes using GEO gene expression datasets

YasCoMa/ppi_validation_process

Python pipelines to filter positive predicted protein interactions according to two criteria: (i) association rules of cellular components according to gold standard PPI data from HINT and (ii) text mining on scientific papers published on Pubmed extracting sentences where the proteins in the PPIs appeared in an interaction context

YasCoMa/mutasig

Tensorflow model to classify mutational signatures on Cancer Single Nucleotide Variation files.

YasCoMa/screendop

Pipeline that performs a screening of disease outcome prediction evaluations following two strategy options: graph kernel based combining PPI + gene expression, and the other based on GSEA enriched pathway scores.

YasCoMa/ai_learning_app

YasCoMa/CancerOutcomePrediction

Graph Kernel based outcome prediction using patient interactomes

YasCoMa/dashboard-streamlit-movies

Dashboard illustrating a series of exploration analysis in the movies dataset

YasCoMa/dashboard_impatient_discharges

Dashboard visualization in pure HTML, Javascript and css. Using serverless requests to API for data analysis and statistics summarization.

YasCoMa/dispro-kg-project

Disordered Proteins BioCypher Knowledge graph

YasCoMa/fairlibjs

FAIRLibJs - Library to annotate Javascript libraries according to FAIR metadata standards

YasCoMa/foca_api

API written in Python-Flask to retrieve processed data from the samples metadata exported by GISAID

YasCoMa/foca_webapp

Web application for covid-19 samples metadata from GISAID, illustrating the use of the request functions provided by FOCA-API

YasCoMa/GraKeL

A scikit-learn compatible library for graph kernels

YasCoMa/ivy

The Unified Machine Learning Framework

YasCoMa/manupcal_api

Laravel API for management of licenses of software systems and applications usage as well as addition of users and permission levels by application

YasCoMa/manupcal_app

Web application for management of licenses of software systems and applications usage as well as addition of users and permission levels by application

YasCoMa/medicalImageVolume

YasCoMa/msig

JavaScript SDK to operate NCI/DCEG's Mutation Signature (mSig) API

YasCoMa/paprec_nx_workflow

YasCoMa/paprec_pipeline

Python pipeline to prepare epitopes and protein sequence datasets, extract numerical features from sequence with alignment-free methods, perform model evaluation and test model performance upon feature selection.

YasCoMa/partitions_mtw-nuxt-components

This repository contains a collection of reusable components that can be integrated into Nuxt.js projects to accelerate development and maintain design consistency throughout the application.

YasCoMa/ppintegrator

Python pipelines to prepare PPI (Protein-Protein Interactions) data from reference databases and describe them semantically using ontologies

YasCoMa/preselantest_pipeline

Python3 pipeline to predict t-cell epitopes or parse b-cell bepipred results, filter epitopes and perform multiple-model antigenicity test.

YasCoMa/prs

Calculation polygenic risk for individual 23andme mutation reports using PGS catalog

YasCoMa/prs_notebook_explanation

Polygenic Risk Score (PRS) calculation and test in public data (openSNPs)

YasCoMa/risk_calc

Calculate polygenic risk score from 23andMe And ancestryDNA raw data