Update of Progress:
as of 12.08.
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Data Synthesis Algorithm successfully implemented
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rsd Data generated and model trained with acc ca. 90%
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IG implemented on synthetic data, flaws detected
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Improved graphical display (information compression) proposed
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Graphics from Durrant & Bhatt paper reproduced on synthetic data
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Positional Codon Synonym Similarity score defined and implemented
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IG function from DeepG modified to accept ANY one-hot coded baseline as argument
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Modified IG tested on synthetic data and analyzed graphically
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Real 16S rRNA data applied, tutorial model flaws detected
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16S model retrained and tested with modified IG, graphical analysis
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Sampling-based important feature selection implemented on locus level
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Attempted input reconstruction based on iterative IG, not very helpful
For details, read reports/
folder. Order: RSDexport
—>
IGmodification
—> realdata16s