Dapars_hESC_combined_all_chromosome.txt
Closed this issue · 4 comments
Run DaPars2, Output format, /scDaPars/Example/Dapars_hESC_combined_all_chromosome.txt comes out with a column of numbers. What should I do with the data after Dapars2 runs? Dapars_hESC_combined_all_chromosome.txt What information is the number in the first column?
Use https://github.com/3UTR/DaPars2 test data to generate ./DaPars2_Test_data_chr3/DaPars2_Test_data_result_temp.chr3.txt, use ./DaPars2_Test_data_chr3/DaPars2_Test_data_result_temp.chr3.txt to run the scDAPA software, an error appears as shown in the figure.
After searching for the reason, I found that the https://github.com/YiPeng-Gao/scDaPars/issues/ sample file has more information in the first column than the result file of DaPars2 operation, so I want to consult how the information in the first column is generated.
./DaPars2_Test_data_chr3/DaPars2_Test_data_result_temp.chr3.txt 19K
There is no mention of a column of information in the literature，
Use https://github.com/3UTR/DaPars2 test data to generate ./DaPars2_Test_data_chr3/DaPars2_Test_data_result_temp.chr3.txt, use ./DaPars2_Test_data_chr3/DaPars2_Test_data_result_temp.chr3.txt to run the scDAPA software, an error appears as shown in the figure.
After searching for the reason, I found that the https://github.com/YiPeng-Gao/scDaPars/issues/ sample file has more information in the first column than the result file of DaPars2 operation, so I want to consult how the information in the first column is generated.
./DaPars2_Test_data_chr3/DaPars2_Test_data_result_temp.chr3.txt 19K
I think this is because the example file only have 2 samples.... it does not make sense to cluster 2 samples..
The example file has been updated.