Pinned Repositories
aCNViewer
Comprehensive genome-wide visualization of absolute copy number and copy neutral variations
atac-seq-pipeline
ENCODE ATAC-seq pipeline
bamdst
a lightweight bam file depth statistical tool
bcbio.variation
Toolkit to analyze genomic variation data, built on the GATK with Clojure
bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
CINSignatureQuantification
Quantifying copy number signatures from new copy number profiles
copynumber
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/copynumber.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=copynumber.
DoAbsolute
:package: Automate Absolute Copy Number Calling using 'ABSOLUTE' package
Download
YingYa's Repositories
YingYa/aCNViewer
Comprehensive genome-wide visualization of absolute copy number and copy neutral variations
YingYa/atac-seq-pipeline
ENCODE ATAC-seq pipeline
YingYa/bamdst
a lightweight bam file depth statistical tool
YingYa/bcbio.variation
Toolkit to analyze genomic variation data, built on the GATK with Clojure
YingYa/bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
YingYa/CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
YingYa/CINSignatureQuantification
Quantifying copy number signatures from new copy number profiles
YingYa/copynumber
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/copynumber.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=copynumber.
YingYa/DoAbsolute
:package: Automate Absolute Copy Number Calling using 'ABSOLUTE' package
YingYa/Download
YingYa/ema
Fast & accurate alignment of barcoded short-reads
YingYa/gatk-protected
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
YingYa/GATK-QScripts
GATK QScripts used in our illumina variant calling pipeline.
YingYa/gridss-purple-linx
Standalone GRIDSS/PURPLE/LINX pipeline
YingYa/MuSE
Somatic point mutation caller
YingYa/ngseasy
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
YingYa/polysolver-singularity
Building a Singularity image of Polysolver
YingYa/R-ICI_MNB_Survival
YingYa/Scissor_V5
Scissor package fixed for Seurat V5
YingYa/sigDriver
Driver discovery using mutational signatures
YingYa/TS
Torrent Suite