This repository cotains the R scripts to reproducing the "Principal Component Analysis of Binary Genomics Data" paper \url{https://academic.oup.com/bib/article/20/1/317/4372404}. The original version can be found in \url{http://www.bdagroup.nl}.
title: Code for reproducing "Principal Component Analysis of Binary Genomics Data" paper Article Doi 10.1093/bib/bbx119 author: Yipeng Song topic: binary PCA methods copyright information: BDA group, University of Amsterdam
Content: 1_demo_binaryPCA.Rmd: demo of binary data simulation and PCA methods for binary data 2_CV_procedures.Rmd: examples of EM-wold cross validation (CV) Rcode: code_EM_wold_cross-validation.R: R script for EM-wold CV of different PCA methods
For logistic PCA and logistic SVD, you can also refer the document of logisticPCA package.
For Gifi method, you can also refer the document of homals package.
For pca method, you can also refer the document of pcaMethods package.
sessionInfo()