/BioLib

Yiwei Niu's open source libraries for bioinformatics (unstable, pre-alpha)

Primary LanguagePython

BioLib

Yiwei Niu's open source Python3 libraries for bioinformatics.

Install

Prerequisite

Usage

Common used formats

FASTA

  • read
  • build Index
  • random access
  • statistics

Ref

FASTQ

  • read
  • build Index
  • random access
  • statistics

BED

  • read
  • random access
  • statistics

GTF/GFF

  • read
  • build Index
  • random access
  • statistics

SAM/BAM

Based on Pysam.

  • read
  • build Index
  • random access
  • statistics

VCF

Based on vcfpy

Common used bio-tools

plot

Based on matplotlib.

  • venn plot
  • concordance plot

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