Pinned Repositories
vcf2msa.py
Package for writing multiple sequence alignments of pseudo-references from a VCF file with a reference genome
Aiptasia_DNA_Meth
Here are some codes for DNA methylation analysis.
Extract-intron-from-gff3
This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.
FrameShiftFixer
Correct frameshifts in genome sequences using protein alignment and vcf file.
pangenome_modeling
Pan-genome modeling script in R
reditools-updated
A copy of REDItools (RNA editing analysis) on github, updated to be compatible with new version of pysam.
vcf2msa
Package for writing multiple sequence alignments of pseudo-references from a VCF file with a reference genome
YongLiedu's Repositories
YongLiedu/Aiptasia_DNA_Meth
Here are some codes for DNA methylation analysis.
YongLiedu/Extract-intron-from-gff3
This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.
YongLiedu/FrameShiftFixer
Correct frameshifts in genome sequences using protein alignment and vcf file.
YongLiedu/pangenome_modeling
Pan-genome modeling script in R
YongLiedu/reditools-updated
A copy of REDItools (RNA editing analysis) on github, updated to be compatible with new version of pysam.
YongLiedu/vcf2msa
Package for writing multiple sequence alignments of pseudo-references from a VCF file with a reference genome