/gvcf_to_annotated_vcf_nextflow

Nextflow pipeline for generating multi-sample VQSR- and dbSNP-annotated VCFs from per-sample gVCFs generated by fastq_to_gvcf.nf. Also contains a pipeline for preparing dbSNP and archaic hominin VCFs for usage with hs37d5 modern human VCFs.

Primary LanguageNextflowMIT LicenseMIT

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