/publication-code

Code to reproduce the results in my first author publications

Primary LanguageJupyter Notebook

This repository contains all the code needed to reproduce figures contained within all of my first author publications. Each publication has it's own folder; see index.csv for which folder corresponds to each publication.

All code is run on python 3.6 or python 3.7. To run the code you will need an installation of conda. When this is done change to a specific publication directory, and an environment can be set up to run the code using the following shell commands:

conda env create -f environment.yml --name pub-env
source activate pub-env

All of the code is stored in jupyter notebooks. To run a notebook, just run

jupyter notebook

You can then select and run files individually.