YunyiShen
PhD student at MIT/LIDS. Bayesian statistics in ecology, genetics and astronomy. Large carnivore ecology.
Massachusetts Institute of TechnologyCambridge
Pinned Repositories
ABB-minlin
Analyzing Asiatic Black Bear Distribution in Sichuan Using Min-Linear Logistic Regression
CAR-LASSO
Conditional Auto-Regressive LASSO in R
CeleriteQFD
Celerite Gaussian Process Detrending Combined with Quiet-Firing-Decay HMM for non-supervised Stellar Flare Detection using Photometric data
ecology-journals-latex
Collection of latex templates for ecology journals
Eyes-on-Apostles
R Shiny based visualization tool for camera trap program "Eyes on Apostles" for the Apostle Island National Lakeshore
linconGaussR
Header-only R package that samples from Gaussians under linear domain constraints following Gessner et al. 2019
mSSL
Header-only R Package Containing Collection of Multivariate Spike-and-Slab LASSO Models
neuro-positioning
Finding Neuron Receptive Field
weird-posteriors
Posterior with interesting shapes from actually used models
WI-wolf-expansion
YunyiShen's Repositories
YunyiShen/RSZIGAM
Repeated (Imperfect) Sampling Zero Inflated Generalized Additive Models
YunyiShen/Camera_trapping_data_analysis_tools
Small tools for camera trapping data analysis
YunyiShen/Color-and-Pattern-Evolution-of-Pheasants
Understanding Why Pheasants are so Colorful with Data of Morphology, Phylogeny and Ecology
YunyiShen/PKU_talk_2019-6-5
YunyiShen/RFoccu
Fit Random Forest into Occupancy Framework with a Gibbs Sampler
YunyiShen/ActivityPP
Model daily activity pattern of animal species using periodic Poisson process with camera trapping data
YunyiShen/APIS_Pipeline
Deep Learning Pipeline for APIS camera-trapping
YunyiShen/camera-trap-classifier
Automatically identify animals in camera trap images by training a deep neural network.
YunyiShen/Cross-Breeding-of-two-Pheasants
This is a working repo for Yunyi's project, cross breeding of pheasants.
YunyiShen/Detecting_pairwise_correlations_in_spike_trains
Supplementary material for the paper "Detecting pairwise correlations in spike trains: an objective comparison of methods and application to the study of retinal waves"
YunyiShen/getNCBI
Small tool to search Genbank with keywords, and get FASTA. Also an exercise using Selenium with R.
YunyiShen/gitmentsrepo
YunyiShen/induction_power
Analytical and numerical calculation for heating of a cylindrical workpiece placed in an induction coil.
YunyiShen/infrared-bird-box
A bird box with the Pi NoIR Camera Module
YunyiShen/IsingOccu-core
Ising based occupancy model with MCMC
YunyiShen/Island_MRF_MCMC
MRF island biogeography modeling
YunyiShen/jekyll-image-gallery-example
Illustrates how to integrate a highly flexible image gallery into a Jekyll blog/website.
YunyiShen/Leaf_Area_Variance_in_Single_Individual
Research Project of Botany 455 2018 Fall
YunyiShen/manuscript-templates
LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.
YunyiShen/Nonconvex-Euclidean-Distance-Geometry-Problem-Solver
A fast nonconvex algorithm for the Euclidean Distance Geometry Problem
YunyiShen/Pi_Monitored_Bird_Box
Monitor a bird box/feeder using camera, humidity, temperature and motion sensors using Raspberry Pi
YunyiShen/qtcsdr
It turns your Raspberry Pi 2 and RTL-SDR into an amateur radio transceiver! (Released under BSD license.)
YunyiShen/scholar.py
A parser for Google Scholar, written in Python
YunyiShen/SDM-GIS-tools
Small tool box for GIS during species distribution modeling
YunyiShen/SEIR-COVID19-CHN
SEIR model for COVID19, Chinese version translated from Alison et al.
YunyiShen/SparseIsingSampler
Sampling Ising Model with Sparse Graph, Modified from R package IsingSampler. Used in IsingOccu
YunyiShen/Species_network_active_learning
Active Learning sampling design for multi-species occupancy study
YunyiShen/Trait-in-Spp-Network
Trait based network analysis in distribution of species
YunyiShen/UW-Course-Projects
All the projects need to be public during my school years in UW-Madison
YunyiShen/wi-thesis-template
LaTeX dissertation template for the University of Wisconsin--Madison