YushuShi
Biostatistics Postdoc at MD Anderson Biostatistics
University of Texas MD Anderson Cancer Center
Pinned Repositories
aPCoA
BayesianKnockoff
Bayesian Knockoff Generator for Data with Complex Structure
CATMicrobiome
correctedC
Compute C index for various survival models
dcurvesContour
looPA
MicrobiomeCluster
This package includes basic functions calculating OTU and CROTU abundance. It also provides distance and levels of tree nodes and tips from its root. Researchers can use MicrobiomeCluster package to manipulate an existing tree by trimming or growing branches, or check if a Beta metric is suitable for clustering a dataset.
sparseMbClust
Use MFMDM and MFMDTM to cluster microbiome data
survivalContour
Plot predicted survival with colored contour plot using various methods
survivalContourRshiny
R shinyapp to plot predicted survival with colored contour plot using various methods
YushuShi's Repositories
YushuShi/sparseMbClust
Use MFMDM and MFMDTM to cluster microbiome data
YushuShi/survivalContour
Plot predicted survival with colored contour plot using various methods
YushuShi/aPCoA
YushuShi/MicrobiomeCluster
This package includes basic functions calculating OTU and CROTU abundance. It also provides distance and levels of tree nodes and tips from its root. Researchers can use MicrobiomeCluster package to manipulate an existing tree by trimming or growing branches, or check if a Beta metric is suitable for clustering a dataset.
YushuShi/CATMicrobiome
YushuShi/BayesianKnockoff
Bayesian Knockoff Generator for Data with Complex Structure
YushuShi/correctedC
Compute C index for various survival models
YushuShi/dcurvesContour
YushuShi/looPA
YushuShi/survivalContourRshiny
R shinyapp to plot predicted survival with colored contour plot using various methods
YushuShi/MicroBVS