ZYZhang17's Stars
DerrickWood/kraken2
The second version of the Kraken taxonomic sequence classification system
kingparks/cursor-vip
cursor IDE enjoy VIP
vvr-rao/Training-a-Mini-114M-Parameter-Llama-3-like-Model-from-Scratch
Trained a 114 million Parameter LLM from Scratch.
mheinzinger/ProstT5
Bilingual Language Model for Protein Sequence and Structure
urmi-21/orfipy
Fast and flexible ORF finder
althonos/pyrodigal
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
ncbi/vadr
Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
bansky-cl/diffusion-nlp-paper-arxiv
Auto get diffusion nlp papers in Axriv. More papers Information can be found in another repository "Diffusion_NLP_Papers".
IndexFziQ/Diffusion4NLP-Papers
A paper list about diffusion models for natural language processing.
cloneofsimo/d3pm
Minimal Implementation of a D3PM in pytorch
sanger-pathogens/Artemis
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Peldom/papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
liuzy0708/Awesome_OL
A General Toolkit for Online Learning Approaches
HICAI-ZJU/Scientific-LLM-Survey
Scientific Large Language Models: A Survey on Biological & Chemical Domains
JerryYin777/NanoGPT-Pytorch2.0-Implementation
This is a repo for my NanoGPT Pytorch2.0 Implementation when torch2.0 released soon, faster and simpler, a good tutorial learning GPT.
zotero-chinese/styles
中文 CSL 样式
DasLab/arnie
Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
fatalerror-i/ThuWordThesis
清华大学学位论文Word模板。A Word thesis template for Tsinghua University.
a96123155/UTR-LM
zotero-chinese/zotero-plugins
Zotero Plugins Collection | Zotero 插件合集 | Awesome Zotero Plugins
syt2/zotero-addons
Install add-ons directly in Zotero | Zotero Add-on Market | Zotero插件市场
alibaba/LucaProt
LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein function.
sokrypton/GREMLIN
GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the family. The strength of measured co-evolution is strongly predictive of residue-residue contacts in the 3D structure of the protein.
nselem/evcouplings
Dockerfile EVcouplings
Fafa-DL/Lhy_Machine_Learning
李宏毅2021/2022/2023春季机器学习课程课件及作业
BLasher113/bpRNA_align
csfoo/contrafold-se
CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data
Forbu/D3PM_replication
Implementation of the D3PM algorithm (diffusion with categorical variable)
ljh0v0/D3PM-Pytorch
Unofficial PyTorch implementation of Discrete Denoising Diffusion Probabilistic Model(D3PM)
Shark-NLP/DiffuSeq
[ICLR'23] DiffuSeq: Sequence to Sequence Text Generation with Diffusion Models