Zhang-Rui-2018
Postdoc at MGH, Broad, and HMS | Ph.D. in Computational Biology at UCAS
Boston, MA, USA
Pinned Repositories
gcta
GCTA software
AdmixSim2
forward-time simulator of population genetic data
ArchaicSeeker2.0
ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest version of this series, ArchaicSeeker 2.0, has the following three notable improvements compared with the original version of this software. First, it can automatically determine the boundary of each introgressed sequence. Next, it is capable of tracing both known and unknown ancestral sources of a given introgressed sequence. Finally, it has the ability to reconstruct the introgression history with more sophisticated introgression models.
HierarchyMix
reconstruct the 4-way complex admixture history
MultiWaver2.0
MultiWaver series software was designed to infer population admixture history in case of various and complex scenarios. The earlier version of MultiWaver considered only the discrete admixture models. In the newly developed version MultiWaver 2.0, we implemented a more flexible framework to automatically select an optimal admixture model among discrete models and continuous models.
MultiWaverX
Inference on the sex-biased admixture history
SimAncestry1.0
SimAncestry is a script to extract archaic introgressed sequences from ms simulation output.
AdmixSim2
forward-time simulator of population genetic data
MultiWaverX
Inference on the sex-biased admixture history
Zhang-Rui-2018's Repositories
Zhang-Rui-2018/AdmixSim2
forward-time simulator of population genetic data
Zhang-Rui-2018/MultiWaverX
Inference on the sex-biased admixture history