Pinned Repositories
2019_Strunz
Reproducibility repo accompanying Strunz et al. "Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis". Nat Commun. 2020.
AnalyzeSkeleton
ImageJ/Fiji plugin to analyze 2D and 3D skeleton images
AnimatedDrawings
Code to accompany "A Method for Animating Children's Drawings of the Human Figure"
autospill
R package: AutoSpill algorithm for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
ZhaoJK's Repositories
ZhaoJK/pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
ZhaoJK/AnimatedDrawings
Code to accompany "A Method for Animating Children's Drawings of the Human Figure"
ZhaoJK/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
ZhaoJK/bark
🔊 Text-Prompted Generative Audio Model
ZhaoJK/celltypist
A tool for semi-automatic cell type annotation
ZhaoJK/cellxgene
An interactive explorer for single-cell transcriptomics data
ZhaoJK/cellxgeneVIP_docker
install cellxgeneVIP in docker
ZhaoJK/chineseocr_lite
超轻量级中文ocr，支持竖排文字识别, 支持ncnn、mnn、tnn推理 ( dbnet(1.8M) + crnn(2.5M) + anglenet(378KB)) 总模型仅4.7M
ZhaoJK/CollectCodes
Personel collected codes
ZhaoJK/Compass
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
ZhaoJK/compass_apptainer
apptainer image for compass
ZhaoJK/dropseq_personel
Pipeline to process DROP-seq data
ZhaoJK/extended-single-cell-best-practices-container
Hosting the container for the extended single-cell best-practices book
ZhaoJK/Fascia_calcium_scoring
Code for evaluate swelling and contraction score across fibroblasts; Code for evaluating calcium intensity in cultured fascia in vitro
ZhaoJK/fetch_srr
Download SRR in batch with snakemake
ZhaoJK/fiji_script_repo
This is a test
ZhaoJK/FlowCytometryTools
A python package for visualization and analysis of high-throughput flow cytometry data
ZhaoJK/gpt4free
decentralising the Ai Industry, just some language model api's...
ZhaoJK/ijl-utilities-wrappers
Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
ZhaoJK/Instrumenta
Free and open source consulting-style Powerpoint toolbar
ZhaoJK/PCLS_perturbations
ZhaoJK/pycyto
pycyto for fcs data analysis
ZhaoJK/python_for_microscopists
https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1
ZhaoJK/RIRA
Code for utility of RIRA for classification of cell types/phenotypes
ZhaoJK/run_jython_scripts_from_ide
Blog post: How to develop ImageJ Java plugins and Jythons scripts simultaneously from your IDE
ZhaoJK/sanbomics_scripts
scripts and notebooks from sanbomics
ZhaoJK/SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
ZhaoJK/script-editor
Script Editor and Interpreter for SciJava script languages
ZhaoJK/TrackMate
TrackMate is your buddy for your everyday tracking.
ZhaoJK/Web-Dev-For-Beginners
24 Lessons, 12 Weeks, Get Started as a Web Developer