# OrthologFinding This repository is for Ortholog finding between two different species by lastal. usage: lftpip.v3.py [-h] -q QUERYGENOME -db DBDICT [-psl PSL] -t TARGETGENOME -b ANOTATIONFILE [-sq SPLITQ] [-d OPTDIRECT] [-p PROCESS] [-m RUNMEM] To Run Liftover Program Automatically. Writen by Zhen Li at Jan, 4, 2020 optional arguments: -h, --help show this help message and exit -q QUERYGENOME, --querygenome QUERYGENOME The query genome sequence which should be fasta format. -db DBDICT, --dbdict DBDICT The db directory name. -psl PSL, --psl PSL Whether use the psl format file directly. -t TARGETGENOME, --targetgenome TARGETGENOME The target genome sequence which should be fasta format. -b ANOTATIONFILE, --anotationfile ANOTATIONFILE The anotation file which should be bed format. -sq SPLITQ, --splitq SPLITQ The number that the query genome should be splited into -d OPTDIRECT, --optdirect OPTDIRECT The destinated directory in where all of your output will be stored. -p PROCESS, --process PROCESS The maximum process number that could run at the same time. -m RUNMEM, --runmem RUNMEM The memory size(gb) that each task will be used.
Zhenlisme/OrthologFinding
This repository is for Ortholog finding between two different species.
Python