/Lung-Vessel-Segmentation-Using-Graph-cuts

Primary LanguageMATLABGNU General Public License v3.0GPL-3.0

Lung-Vessel-Segmentation-Using-Graph-cuts

  1. Prepare the Graph-cuts optimizer with the following link: http://www.wisdom.weizmann.ac.il/~bagon/matlab_code/GCmex1.9.tar.gz

  2. Unzip the 'GCmex1.9.tar.gz' and complie the graph-cuts mex file following the corresponding instruction.

  3. Run Demo.m file in Matlab

If you use the software, you should reference the following paper:

@inproceedings{zhai2016lung,
  title={Lung vessel segmentation in CT images using graph-cuts},
  author={Zhai, Zhiwei and Staring, Marius and Stoel, Berend C},
  booktitle={Medical Imaging 2016: Image Processing},
  volume={9784},
  pages={97842K--97849k},
  year={2016},
  organization={International Society for Optics and Photonics}
}
@article{zhai2019automatic,
  title={Automatic quantitative analysis of pulmonary vascular morphology in CT images},
  author={Zhai, Zhiwei and Staring, Marius and Hern{\'a}ndez Gir{\'o}n, Irene and Veldkamp, Wouter JH and Kroft, Lucia J and Ninaber, Maarten K and Stoel, Berend C},
  journal={Medical physics},
  volume={46},
  issue={9}
  pages={3985-3997},
  year={2019},
  publisher={Wiley Online Library}
}

[1] Zhai, Zhiwei, Marius Staring, and Berend C. Stoel. "Lung vessel segmentation in CT images using graph cuts." SPIE Medical Imaging. International Society for Optics and Photonics, 2016.

[2] Zhai, Zhiwei, et al. "Automatic quantitative analysis of pulmonary vascular morphology in CT images." Medical physics (2019).