Pinned Repositories
scPathoQuant
single cell pathogen alignment and quantification tool
SpatialDE
Test genes for Spatial Variation
Markov-Random-Field-Project
This project has two parts. In part one, we use markov random field to denoise an image. In Part two, we use similar model for image segmentation.
scReadSim
A single cell sequencing read simulator.
Software-design
SpaGCN
SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
spateo-release
Spatiotemporal modeling of spatial transcriptomics
TissueNet-Mesmer
Scripts capable of re-creating figures from Van Valen Lab publications
Zhixuan-Jing's Repositories
Zhixuan-Jing/Software-design
Zhixuan-Jing/Markov-Random-Field-Project
This project has two parts. In part one, we use markov random field to denoise an image. In Part two, we use similar model for image segmentation.
Zhixuan-Jing/scReadSim
A single cell sequencing read simulator.
Zhixuan-Jing/SpaGCN
SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
Zhixuan-Jing/spateo-release
Spatiotemporal modeling of spatial transcriptomics
Zhixuan-Jing/TissueNet-Mesmer
Scripts capable of re-creating figures from Van Valen Lab publications