Pinned Repositories
100-Days-Of-ML-Code-1
100-Days-Of-ML-Code中文版
atac-seq-pipeline
ENCODE ATAC-seq pipeline
Bash-Oneliner
Bash Oneliner will focus on bash commands for parsing plain text and biological data, which usually are tsv files(tab-separated values); some of the commands are for Ubuntu system maintaining. I apologize that there won't be any citation of the code, but they are probably from dear Google and Stackoverflow. Not all the code here are oneliner (if the ';' counts..). English and bash are not my first language, so... correct me anytime, tks!!
Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
BLCA_scRNA
The code was used to process and analyze bladder cancer single cell sequence data
bms038_analysis
Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization
ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
ctvt
Source code from the paper: "The evolutionary history of dogs in the Americas"
dca
Deep count autoencoder for denoising scRNA-seq data
Deep-Learning-21-Examples
《21个项目玩转深度学习———基于TensorFlow的实践详解》配套代码
Zhumd's Repositories
Zhumd/atac-seq-pipeline
ENCODE ATAC-seq pipeline
Zhumd/Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
Zhumd/BLCA_scRNA
The code was used to process and analyze bladder cancer single cell sequence data
Zhumd/ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
Zhumd/ctvt
Source code from the paper: "The evolutionary history of dogs in the Americas"
Zhumd/Deep-Resp-Forest
Zhumd/DeepLearning
深度学习入门教程&&优秀文章&&Deep Learning Tutorial
Zhumd/dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
Zhumd/DockerTarBuilder
它是一个工作流。可快速构建指定架构/平台的docker镜像
Zhumd/dragonstar2019
Zhumd/ds-cheatsheets
List of Data Science Cheatsheets to rule the world
Zhumd/FCA_liver
All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).
Zhumd/genomepy
Download genomes the easy way.
Zhumd/GitHub-Chinese-Top-Charts
:cn: GitHub中文排行榜，帮助你发现高分优秀中文项目、更高效地吸收国人的优秀经验成果；榜单每周更新一次，敬请关注！（**加油！世界加油！）
Zhumd/Hospital
OpenPower工作组收集汇总的医院开放数据
Zhumd/libpku
贵校课程资料民间整理
Zhumd/liger
R package for integrating and analyzing multiple single-cell datasets
Zhumd/Mask_RCNN
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
Zhumd/MOLI
MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction
Zhumd/MuSiC
Multi-subject Single Cell Deconvolution
Zhumd/NGS-analysis
二代测序数据分析
Zhumd/REKCARC-TSC-UHT
清华大学计算机系课程攻略 Guidance for courses in Department of Computer Science and Technology, Tsinghua University
Zhumd/seucourseshare
东南大学课程共享计划
Zhumd/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Zhumd/SouthEastUniversity
东南大学软件学院课程资料
Zhumd/st_pipeline
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
Zhumd/Statistical-Learning-Method_Code
手写实现李航《统计学习方法》书中全部算法
Zhumd/tianchi-lung-challenge-2019
天池：肺部CT多病种智能诊断
Zhumd/workflow_to_analysis_WES
workflow to analysis of whole-exome-sequencing
Zhumd/you2php-heroku