Pinned Repositories
QUILT
QUILT: Low coverage whole genome sequence imputation with large reference panels
BaseVarC
The repo was not under development. Check out angsd toolkit for low depth data analyses.
BioScripts
Cool Bioinformatics Scripts
lcWGS-imputation-workflow
Imputation workflow for low coverage whole genome sequencing data
org-tufte
Export org file to the beauty Tufte html
PCAone
Fast, Accurate and Memory-Efficient Principal Component Analysis All in One
PCAoneR
The PCAone algorithms in R
phaseless
Imputation and Admixture for lcWGS in one goal
vcfpp
a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
vcfppR
The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049
Zilong-Li's Repositories
Zilong-Li/org-tufte
Export org file to the beauty Tufte html
Zilong-Li/PCAone
Fast, Accurate and Memory-Efficient Principal Component Analysis All in One
Zilong-Li/vcfpp
a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
Zilong-Li/vcfppR
The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049
Zilong-Li/BioScripts
Cool Bioinformatics Scripts
Zilong-Li/lcWGS-imputation-workflow
Imputation workflow for low coverage whole genome sequencing data
Zilong-Li/BaseVarC
The repo was not under development. Check out angsd toolkit for low depth data analyses.
Zilong-Li/PCAoneR
The PCAone algorithms in R
Zilong-Li/array-imputation-workflow
imputation workflow for array data using shapeit2 and impute2
Zilong-Li/phaseless
Imputation and Admixture for lcWGS in one goal
Zilong-Li/SeqLib
C++ htslib interface for manipulating sequence data and VCF
Zilong-Li/bgen
fast bgen parser for python
Zilong-Li/bioconda-recipes
Conda recipes for the bioconda channel.
Zilong-Li/cuteSV
Long read based human genomic structural variation detection with cuteSV
Zilong-Li/gVAMP
Vector Approximate Message Passing inference framework for GWAS
Zilong-Li/Papers
Zilong-Li/random
Zilong-Li/Sniffles
Structural variation caller using third generation sequencing
Zilong-Li/STITCH
STITCH - Sequencing To Imputation Through Constructing Haplotypes
Zilong-Li/Syllable-PBWT
Zilong-Li/vim-auto-popmenu
:sunglasses: Display the Completion Menu Automantically (next AutoComplPop) !!
Zilong-Li/vim-dict
add my dict for completion in vim