Pinned Repositories
BASALT
BUSCO-MAG-Phylogeny
Construction of concatenated gene tree from BUSCO genes
Cenote-Taker2
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs
Demovir
Taxonomic classification of viruses at Order and Family level
emg-viral-pipeline
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
ggcor
Extended tools for correlation analysis and visualization.
gggenes
➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
gggenomes
A grammar of graphics for comparative genomics
ggmap
A package for plotting maps in R with ggplot2
metagenome_analyses
Using IDBA-ud, this is how we assemble metagenomic reads into scaffolds on different projects
ZongzhiWu's Repositories
ZongzhiWu/emg-viral-pipeline
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
ZongzhiWu/My_bioinformatics
ZongzhiWu/BASALT
ZongzhiWu/BUSCO-MAG-Phylogeny
Construction of concatenated gene tree from BUSCO genes
ZongzhiWu/Cenote-Taker2
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs
ZongzhiWu/ggcor
Extended tools for correlation analysis and visualization.
ZongzhiWu/gggenes
➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
ZongzhiWu/gggenomes
A grammar of graphics for comparative genomics
ZongzhiWu/ggmap
A package for plotting maps in R with ggplot2
ZongzhiWu/GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
ZongzhiWu/GWVC
Custom codes for the Groundwater Virome Database (GWVD)
ZongzhiWu/metapop
A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
ZongzhiWu/MGV
Supporting code for uncultivated gut virus manuscript
ZongzhiWu/multiPhATE2
multiPhATE with comparative genomics
ZongzhiWu/ncbitax2lin
🐞 Convert NCBI taxonomy dump into lineages
ZongzhiWu/OGFilter
A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria
ZongzhiWu/orthocounts2bin
A script to get from Orthogroups.GeneCount.tsv to a gene presence/absence binary alignment.
ZongzhiWu/phage_contig_annotator
Annotates genes on putative phage contigs with protein orthologous groups using PHROGs
ZongzhiWu/PhyloRank
Assign taxonomic ranks based on evolutionary divergence.
ZongzhiWu/PKUAutoSubmit-action
百京大学燕园云战役自动填报小助手 Github Action
ZongzhiWu/plasmapR
Creating plasmid maps inside ggplot.
ZongzhiWu/RNA2virus
Pipline for detecting viral sequences from RNA-seq data
ZongzhiWu/Useful_scripts
ZongzhiWu/VGEA
VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.
ZongzhiWu/vHULK
viral Host UnveiLing Kit (vHULK)
ZongzhiWu/viralClust
Small pipeline to cluster viral genomes based on their k-mer content. WiP
ZongzhiWu/viromics
ZongzhiWu/VirSorter2
customizable pipeline to identify viral sequences from (meta)genomic data
ZongzhiWu/What_the_Phage
WtP: Phage identification via nextflow and docker or singularity
ZongzhiWu/ZongzhiWu.github.io
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