BioGraPy - Biological Graphical Library in Python ================================================= Quick examples ------------------------------------------ Simple test >>> from biograpy import Panel, tracks, features >>> panel=Panel(fig_width=1000,fig_dpi=100)#initialize a drawer >>> test_track = tracks.BaseTrack(name = 'test') Create 5 graphicfeatures >>> feat1=features.Simple(name='feat1',start=100,end=756,fc='r',aplha=0.5,height=1) >>> feat2=features.Simple(name='feat2',start=300,end=1056,fc='pink',aplha=0.5,height=1) >>> feat3=features.Simple(name='feat3',start=600,end=1356,fc='y',aplha=0.5,height=1) >>> feat4=features.Simple(name='feat4',start=800,end=1356,fc='g',aplha=0.5,height=1) >>> feat5=features.Simple(name='feat5',start= 1357,end=1806,fc='b',aplha=0.5,height=1) Add the features to the track:: >>> test_track.append(feat1) >>> test_track.append(feat2) >>> test_track.append(feat3) >>> test_track.append(feat4) >>> test_track.append(feat5) Add the track to the panel:: >>> panel.add_track(test_track) Save the drawn image in PDF format:: >>> panel.save('test.pdf') or in short, using default styles, and saving as PNG:: >>> from biograpy import Panel, tracks, features >>> panel=Panel(fig_width=1000)#initialize a drawer >>> test_track = tracks.BaseTrack(features.Simple(name='feat1',start=100,end=756,), features.Simple(name='feat2',start=300,end=1056,), features.Simple(name='feat3',start=600,end=1356,), features.Simple(name='feat4',start=800,end=1356,), features.Simple(name='feat5',start= 1357,end=1806,), name = 'test') >>> panel.add_track(test_track) >>> panel.save('test.png') draw a SeqRecord >>> from biograpy.seqrecord import SeqRecordDrawer >>> from Bio import SeqIO >>> seqrec = SeqIO.read(open('biograpy/tests/test_uniprot.xml'),'uniprot-xml') >>> grseqrec = SeqRecordDrawer(seqrec) >>> grseqrec.save('biograpy/tests/test_uniprot.svg')