Pinned Repositories
biology
Biology related models
COVID19
model of how the infection may be spreading
CSensApprox
Experiments with Sensitivity Approximation (SA) in C using the gsl ode solvers.
DemoModel
A demonstration and testing model for sampling and model conversion
mcmc_clib
c program for simplified manifold MALA sampling of ODE model parameters
ode_rmhmc
Sources for the MATLAB implementation of RMHMC using Newton-Raphson steady state finding and linear equation sensitivity analysis
rgsl
R gsl solver interface
RPN-derivative
Calculates the derivative of anexpression given in reverse polish notation
SBtabVFGEN
Convert a Model written in SBtab, saved as an Open Document Spreadsheet to a VFGEN vector field file
Systems-Biology-Scripts
Scripts that are useful for the processing of parameter samples of dynamic models
a-kramer's Repositories
a-kramer/ode_rmhmc
Sources for the MATLAB implementation of RMHMC using Newton-Raphson steady state finding and linear equation sensitivity analysis
a-kramer/mcmc_clib
c program for simplified manifold MALA sampling of ODE model parameters
a-kramer/biology
Biology related models
a-kramer/COVID19
model of how the infection may be spreading
a-kramer/CSensApprox
Experiments with Sensitivity Approximation (SA) in C using the gsl ode solvers.
a-kramer/DemoModel
A demonstration and testing model for sampling and model conversion
a-kramer/rgsl
R gsl solver interface
a-kramer/RPN-derivative
Calculates the derivative of anexpression given in reverse polish notation
a-kramer/SBtabVFGEN
Convert a Model written in SBtab, saved as an Open Document Spreadsheet to a VFGEN vector field file
a-kramer/Systems-Biology-Scripts
Scripts that are useful for the processing of parameter samples of dynamic models
a-kramer/emacs-svg-images
This is me learning elisp and emacs
a-kramer/forking-workflow-exercise
Exercise to practice collaborative forking workflow.
a-kramer/model
Brainstorming for a new format for Systems Biology
a-kramer/simbiology-sbml-fix
a-kramer/SimbiologyFluxFunction
a script that makes a flux function for simbiology models
a-kramer/tsv2csv
converts tsv to a somewhat safe csv and back
a-kramer/vfgen
Source code generator for differential equation solvers.
a-kramer/workarounds
These are my workarounds for common problems
a-kramer/Workshop-CodeTesting-AK
Workshop Example Repository for Automatic Code Testing