Pinned Repositories
amatch
Approximate String Matching library
biopython
My fork of the official Biopython repository, used for experimental branches etc
bioruby
bioruby
bioruby-biolinux
Meta package for BioLinux distribution
bioruby-faster
A fast and simple parser for Fasta / FastQ files
bioruby-gem
BioGem helps Bioinformaticians start developing plugins/modules for BioRuby creating a scaffold and a gem package
bioruby-ngs
This plugins is intended to wrap the common software used for Next Generation Sequencing data
bioruby-plugin-graphics
Bio::Graphics is a ruby library for visualizing annotations on chromosomes
bioruby-ucsc-api
Ruby UCSC API: An API for the UCSC Genome Database
Cytoscape_Course
This is a basic cytoscape course intended for beginners to get training with biological network analysis.
a1aks's Repositories
a1aks/Cytoscape_Course
This is a basic cytoscape course intended for beginners to get training with biological network analysis.
a1aks/arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
a1aks/ascat
ASCAT copy number R package
a1aks/ascatNgs
Somatic copy number analysis using WGS paired end wholegenome sequencing
a1aks/cytoscape_tutorials
A set of Cytoscape tutorials for my students
a1aks/FORALL
a1aks/HLA
xHLA: Fast and accurate HLA typing from short read sequence data
a1aks/HLA-LA
Fast HLA type inference from whole-genome data
a1aks/HLA-TAPAS
HLA-TAPAS pipeline for HLA association and fine-mapping studies
a1aks/hlatyping
Precision HLA typing from next-generation sequencing data
a1aks/jvarkit
Java utilities for Bioinformatics
a1aks/lipidr
Data Mining and Analysis of Lipidomics datasets in R
a1aks/luigi
Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.
a1aks/mouseEpididymis
Code for the data analyzing in mouse epididymis scRNA-seq project
a1aks/neo4j-apoc-procedures
Awesome Procedures On Cypher for Neo4j - codenamed "apoc" If you like it, please ★ above ⇧
a1aks/neofox
Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
a1aks/NeoPredPipe
Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
a1aks/network_analysis_workshop
Materials for a workshop on network analysis using Gephi
a1aks/neutcurve
Fit and plot neutralization curves
a1aks/nf-core-user-docs
Documentation and user guides relating to deployment of nf-core pipelines on Stanage
a1aks/opencv
Open Source Computer Vision Library
a1aks/pyqms
pyQms, generalized, fast and accurate mass spectrometry data quantification
a1aks/r-pharma-2023-tidymodels
R/Pharma 2023 Conference workshop materials.
a1aks/R_package_test
First test for R packages to upload on Github
a1aks/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
a1aks/samplot
Plot structural variant signals from many BAMs and CRAMs
a1aks/scrnaseq_course
Our course on the analysis of Single-cell RNA-Seq
a1aks/ShatterSeek
For installing in RE AWS
a1aks/sheffield-bioinformatics-core.github.io
Website for The University of Sheffield Bioinformatics Core
a1aks/vcf2circos
python plotly Circos from VCF