/GseaVis

A implement R package to visualize GSEA results

Primary LanguageROtherNOASSERTION

GseaVis

The goal of GseaVis is to visualize GSEA enrichment results as an implement package for enrichplot gseaplot2 function. And some codes origin from enrichplot package, thanks for Guangchuang Yu professor's contribution!

You can mark your gene name on GSEA plot and this package also support more avaliable parameters to customize your own plot.

Installation

You can install the development version of GseaVis from GitHub with:

# install.packages("devtools")
devtools::install_github("junjunlab/GseaVis")

Examples

This is a basic example:

library(GseaVis)
## basic example code

# all plot
gseaNb(object = gseaRes,
       geneSetID = 'GOBP_NUCLEOSIDE_DIPHOSPHATE_METABOLIC_PROCESS')

image

More examples refer to

https://github.com/junjunlab/GseaVis/wiki