/influenza-pb2

Analysis of influenza PB2 protein interactions

Primary LanguagePythonMIT LicenseMIT

Network flow analysis of influenza PB2 interactors

This repository is a supplement to our manuscript:

Alternative splicing liberates a cryptic cytoplasmic isoform of mitochondrial MECR that antagonizes influenza virus Steven F Baker, Helene Meistermann, Manuel Tzouros, Aaron Baker, Sabrina Golling, Juliane Siebourg Polster, Mitchell P Ledwith, Anthony Gitter, Angelique Augustin, Hassan Javanbakht, Andrew Mehle. bioRxiv 2020 doi:10.1101/2020.11.09.355982

Contents

  • code: a Python library and scripts for network flow and enrichment analysis
  • condor: scripts for running the analyses in a HTCondor cluster
  • data: source and target gene lists for the network flow analysis

TODO

  • update requirements.txt