aakechin

Pinned Repositories

NGS-PrimerPlex
NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design
Language:Python5421
cutPrimers
curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
Language:Python1711
BRCA-analyzer
BRCA-analyzer is a first free automatic multi-threaded tool-workflow for processing NGS data of the BRCA1 and BRCA2 genes.
Language:Python34
BRACNAC
BRACNAC is a new tool for calling copy number variations (CNVs) and alterations (CNAs) in BRCA1 and BRCA2 genes
Language:Python00
DGEA_microRNAs
Python scripts for differential gene expression analysis and identification of microRNA-mRNA anticorrelating pairs
00
endChooser
Tool endChooser chooses the best variant of the last two nucleotides of allele-specific primer
Language:Python00
ERBB4_NTRK_fusions
This repository contains all scripts used for the analysis of differentially expressed genes in thyroid cancer samples with NTRK fusions.
Language:R00
MSI-manuscript
Python-script for calculating NGS reads with insertions and deletions
Language:Python00
prokannot
Procannot annotates SNPs in procaryotic genomes
00

aakechin's Repositories

aakechin/NGS-PrimerPlex
NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design
Language:Python54 5 5921
aakechin/cutPrimers
curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
Language:Python17 4 711
aakechin/BRCA-analyzer
BRCA-analyzer is a first free automatic multi-threaded tool-workflow for processing NGS data of the BRCA1 and BRCA2 genes.
Language:Python34
aakechin/BRACNAC
BRACNAC is a new tool for calling copy number variations (CNVs) and alterations (CNAs) in BRCA1 and BRCA2 genes
Language:Python
aakechin/DGEA_microRNAs
Python scripts for differential gene expression analysis and identification of microRNA-mRNA anticorrelating pairs
aakechin/endChooser
Tool endChooser chooses the best variant of the last two nucleotides of allele-specific primer
Language:Python
aakechin/ERBB4_NTRK_fusions
This repository contains all scripts used for the analysis of differentially expressed genes in thyroid cancer samples with NTRK fusions.
Language:R
aakechin/MSI-manuscript
Python-script for calculating NGS reads with insertions and deletions
Language:Python
aakechin/prokannot
Procannot annotates SNPs in procaryotic genomes