Pinned Repositories
AutoSubmit
A simple script to submit jobs to slurm scheduler dynamically
camo
:lock: an http proxy to route images through SSL
cluster_manager
Manages ipython cluster
d2l-en
Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 400 universities from 60 countries including Stanford, MIT, Harvard, and Cambridge.
enhance
package manager for home directory
Fast_Fisher_Exact_Test
Fast implementation of Fisher exact test (hypergeometric test) in Matlab.
HiC-spector
Spectral and reproducibility analysis of Hi-C contact maps
intermediatePython
LSGrid_Manual
A very brief guide for Life Science Grid usage.
RNASeq_Tutorial
An educational tutorial and working demonstration pipeline for RNA-seq analysis.
aallahyar's Repositories
aallahyar/AutoSubmit
A simple script to submit jobs to slurm scheduler dynamically
aallahyar/camo
:lock: an http proxy to route images through SSL
aallahyar/cluster_manager
Manages ipython cluster
aallahyar/d2l-en
Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 400 universities from 60 countries including Stanford, MIT, Harvard, and Cambridge.
aallahyar/enhance
package manager for home directory
aallahyar/Fast_Fisher_Exact_Test
Fast implementation of Fisher exact test (hypergeometric test) in Matlab.
aallahyar/HiC-spector
Spectral and reproducibility analysis of Hi-C contact maps
aallahyar/intermediatePython
aallahyar/LSGrid_Manual
A very brief guide for Life Science Grid usage.
aallahyar/RNASeq_Tutorial
An educational tutorial and working demonstration pipeline for RNA-seq analysis.
aallahyar/MC-4C_Processed-Datasets
Processed version of MC-4C datasets. For raw data, refer to ENA repository: https://www.ebi.ac.uk/ena/data/view/PRJEB23327
aallahyar/MC-4C_SRMl
Super-resolution Microscopy scripts and corresponding images
aallahyar/Module-5-Open-Research-Software-and-Open-Source
Module 5: Open Research Software and Open Source
aallahyar/my_utilities
aallahyar/Notes
Personal notes about work- and coding-related topics
aallahyar/numpy
The fundamental package for scientific computing with Python.
aallahyar/pandas_contribution
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
aallahyar/pipe4C
4C-seq processing pipeline
aallahyar/Pore-C-Snakemake
fix a bug in pore-c_yml
aallahyar/pyranges
Performant Pythonic GenomicRanges
aallahyar/python-fastq-downloader
A guide on how to find and download raw RNA-seq data from GEO. Batch download FASTQ files using a Python script and the NCBI SRA tools prefetch and fastq-dump.
aallahyar/pyzmqnotes
Learning 0mq with examples and notes from articles on the web
aallahyar/ray
Ray is a unified framework for scaling AI and Python applications. Ray consists of a core distributed runtime and a toolkit of libraries (Ray AIR) for accelerating ML workloads.
aallahyar/Specifications
GFF and GVF specification documents
aallahyar/standard-version
:trophy: Automate versioning and CHANGELOG generation, with semver.org and conventionalcommits.org
aallahyar/swot
Identify email addresses or domains names that belong to colleges or universities. Help automate the process of approving or rejecting academic discounts.
aallahyar/zenodo
Research. Shared.