aallyn
I am a quantitative ecologist interested in using statistical models to understand where species are, why they are there, and where they might go in the future.
Gulf of Maine Research Institute Portland, ME
Pinned Repositories
2018_FSH556
Class materials for FSH556: Spatio-temporal models for ecologists in spring 2018 at UW
aallyn.github.io
adcomp
AD computation with Template Model Builder (TMB)
AHM_Book
A repository for code associated with Kery and Royle Applied Hierarchical Modeling in Ecology (first edition)
coastal-ocean-climate-adaptation
Public repository for GMRI's coastal ocean and climate adaptation (COCA) project
COCA
GMRI Coastal and Oceans Climate Applications work to map current and potential future fish distributions within the Northeast U.S. Large Marine Ecosystem
COCA-EcoAndEcon
COCA code shared between ecology and economics team
COCA_SDM_MS
Repository for COCA Quantitative SDM and Qualitative CVA methods paper (Allyn et al.)
ForecastingChallenge
PhysOce
A collection of functions and code to work with physical oceanographic data, especially sea surface temperature data from satellites and climate model projections
aallyn's Repositories
aallyn/COCA_SDM_MS
Repository for COCA Quantitative SDM and Qualitative CVA methods paper (Allyn et al.)
aallyn/PhysOce
A collection of functions and code to work with physical oceanographic data, especially sea surface temperature data from satellites and climate model projections
aallyn/aallyn.github.io
aallyn/adcomp
AD computation with Template Model Builder (TMB)
aallyn/AHM_Book
A repository for code associated with Kery and Royle Applied Hierarchical Modeling in Ecology (first edition)
aallyn/coastal-ocean-climate-adaptation
Public repository for GMRI's coastal ocean and climate adaptation (COCA) project
aallyn/COCA
GMRI Coastal and Oceans Climate Applications work to map current and potential future fish distributions within the Northeast U.S. Large Marine Ecosystem
aallyn/COCA-SDM
GMRI Coastal and Oceans Climate Applications work to map current and potential future fish distributions within the Northeast U.S. Large Marine Ecosystem
aallyn/COCA_19
Analyses to support COCA 19 project
aallyn/ForecastingChallenge
aallyn/COCA_ShelfWide
Analysis associated with the COCA NELME Shelfwide coupled ecological-social vulnerability assessment
aallyn/Coca_Shiny
aallyn/cv
Awesome CV in R. Based on the vitae package and Dominique Makowski’s template.
aallyn/data-screencasts
Code from live exploratory analyses of data in R
aallyn/ECW_FishClimate
A repository to support fitting and projecting SDMs within Bay of Funday and eastern Nova Scotian waters for
aallyn/EF_Activities
Hands-on activities associated with the Ecological Forecasting book and graduate class
aallyn/FishStatsUtils
Shared resources for spatio-temporal models
aallyn/gmRi
Utility functions for the Gulf of Maine Research Institutes Research Team
aallyn/GMRI_Rocker
aallyn/groundfish-MSE
Development of Robust Management Strategies for Northeast Groundfish Fisheries in a Changing Climate
aallyn/LabVingettes
aallyn/ME-NH-trawl-Seagrant
aallyn/sdmTMB
:earth_americas: An R package for spatial and spatiotemporal GLMMs with TMB
aallyn/SPDE-smoothing
Paper and materials for the paper "Understanding the stochastic partial differential equation approach to smoothing"
aallyn/stat_rethinking_2022
Statistical Rethinking course winter 2022
aallyn/TargetsSDM
A repository supporting implementation of species distribution modeling process with R {targets} package
aallyn/tidytuesday
Official repo for the #tidytuesday project
aallyn/tinyVAST
Expressive interface for multivariate spatio-temporal models
aallyn/Troll_ALB_jSDM
Improving Predictions of Fishery Impacts Under Anomalous Conditions Using a Joint Fishery-Species Distribution Model
aallyn/VAST
Spatio-temporal analysis of univariate or multivariate data, e.g., standardizing data for multiple species or stages