aanil
Bioinformatician in the applications development team at the @NationalGenomicsInfrastructure, part of @SciLifeLab in Stockholm.
@NationalGenomicsInfrastructure @SciLifeLab Stockholm
Pinned Repositories
charon
Database for IGN projects and samples, with RESTful interface. Built on top of Tornado and CouchDB.
DailyRead
The NGI Daily Read
dds_cli
API to access Scilifelab Data Centre's delivery portal. On development
dds_web
A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).
flowcell_parser
Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output
Formalisms
genologics
Python interface to the GenoLogics LIMS server via its REST API.
genologics_sql
Python interface for the Genologics Postgres database.
genomics-status
Tornado server for tracking samples at NGI Stockholm
Group1Day1
aanil's Repositories
aanil/charon
Database for IGN projects and samples, with RESTful interface. Built on top of Tornado and CouchDB.
aanil/DailyRead
The NGI Daily Read
aanil/dds_cli
API to access Scilifelab Data Centre's delivery portal. On development
aanil/dds_web
A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).
aanil/flowcell_parser
Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output
aanil/Formalisms
aanil/genologics
Python interface to the GenoLogics LIMS server via its REST API.
aanil/genologics_sql
Python interface for the Genologics Postgres database.
aanil/genomics-status
Tornado server for tracking samples at NGI Stockholm
aanil/Group1Day1
aanil/HiCapTools
A software suite for Probe Design and Proximity Detection for targeted chromosome conformation capture applications
aanil/irma-provision
Ansible playbooks for provisioning NGI pipeline and related sw
aanil/LIMS2DB
aanil/lims_dashboard
aanil/mdx_outline
Python-Markdown extension to wrap the document logical sections (as implied by h1-h6 headings)
aanil/miarka-provision
Ansible playbooks for provisioning NGI cluster Miarka
aanil/MultiQC_NGI
MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
aanil/nf-co.re
Files for the main nf-core website >>>
aanil/NGI_dashboards
SciLifeLab NGI Dashboard Code
aanil/ngi_pipeline
Code driving the production pipeline at SciLifeLab
aanil/ngi_reports
Code to generate reports for use by the NGI in SciLifeLab
aanil/ngisweden.se
Wordpress theme and plugins for ngisweden.se
aanil/scilifelab_epps
A collection of Genologics Clarity LIMS EPPs used at Scilifelab.
aanil/seqinspector
(hopefully nf-core) pipeline to inspect your sequences
aanil/spectacles
API for a clearer look at clarity
aanil/standalone_scripts
Repository to store standalone scripts that do not belong to any bigger package or repository
aanil/statusdb
Python wrappers and methods to work with CouchDB's instance at NGI Stockholm
aanil/TACA
Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm
aanil/taca-ngi-pipeline
A TACA plugin adding functionality relevant for the ngi_pipeline
aanil/userman
Simple user account handling system for use with web services. Built on top of Tornado and CouchDb.