aapeliv/genoums

"genoums" docker image

Given a .bam file, produces a fastqc report and a salmon quantification on it.

Running it

You need to first install docker.

Make a new empty folder, and put the file you want to process, e.g. genoums.bam in that folder. Then run the following command:

docker run -v $(pwd):/app aapeliv/genoums genoums.bam

The program will run and put all the output in the current folder.