My mods to the UCSF OPSCEA project (March 2022 version).
- Using Brainstorm for electrode localization;
- A function,
OPSCEA_recon
, that exports slice images (without EEG heatmaps, including both coronal and axial/sagittal views) and compiles a pdf document of the reconstruction.
- Simplified interface for
OPSCEAparams.xls
, that eliminates the need to specify the extreme contacts and desired color code for each electrode. - Movie filename includes seizure time (taken from seizure .mat name) and fps, and if an existing movie with the designated name already exists, a new name will be used to prevent automatic over-writing.
- FreeSurfer
- MATLAB (with Brainstorm and OPSCEA)
- Python (with NiBabel and MNE)
- LaTeX
- Run FreeSurfer.
- In Matlab,
- Run
create_brainstorm_subj.m
. - Use Brainstorm to mark electrodes.
- Run
create_opscea_subj.py
. - Edit
OPSCEAparams.xls
. - Run
OPSCEA.m
orOPSCEA_recon.m
.
- Allow use of CAT12 recons;
- Add epileptogenicity score as alternate to line-length for EEG heatmaps;
- Parallelize movie rendering.