aaronmussig
Bioinformatics PhD student at the University of Queensland. Python and Rust enthusiast.
Australian Centre for EcogenomicsBrisbane, Australia
Pinned Repositories
FastANI
Wrapper for FastANI.
gtdb-phylogenetic-diversity
Snakemake pipeline to calculate the phylum phylogenetic diversity of GTDB R220.
impact-of-contamination-on-taxonomy
magna
A collection of bioinformatic datasets and utilities I use in my everyday life.
metatree
Visualisation of polyphyletic groups between phylogenetic trees to a reference tree.
PhyloDM
Efficient calculation of phylogenetic distance matrices.
prole
rsrq
A minimal Redis-backed job queue.
VTracker
For tracking the relationship between group membership changes across versions.
GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
aaronmussig's Repositories
aaronmussig/PhyloDM
Efficient calculation of phylogenetic distance matrices.
aaronmussig/VTracker
For tracking the relationship between group membership changes across versions.
aaronmussig/impact-of-contamination-on-taxonomy
aaronmussig/magna
A collection of bioinformatic datasets and utilities I use in my everyday life.
aaronmussig/metatree
Visualisation of polyphyletic groups between phylogenetic trees to a reference tree.
aaronmussig/FastANI
Wrapper for FastANI.
aaronmussig/gtdb-phylogenetic-diversity
Snakemake pipeline to calculate the phylum phylogenetic diversity of GTDB R220.
aaronmussig/prole
aaronmussig/chiton
Chiton provides a Python wrapper to commonly used bioinformatics programs.
aaronmussig/cytos
aaronmussig/dash-component-boilerplate
Get started creating your own Dash components here.
aaronmussig/ezaai
EzAAI - High Throughput Prokaryotic AAI Calculator
aaronmussig/gunc
Python package for detection of chimerism and contamination in prokaryotic genomes.
aaronmussig/rsrq
A minimal Redis-backed job queue.
aaronmussig/Indizio
A visual analytics tool to investigate correlated data structures using heatmaps, networks, and network statistics.
aaronmussig/java-avl-tree
An implementation of an AVL Tree (self-balancing binary search tree) in Java.
aaronmussig/lpsn-extract-genus-names
Parses the LPSN genus names of latin origin and outputs a table.
aaronmussig/m.chuvochina-16s-tree-vs-gtdb
aaronmussig/OctoRelay
OctoPrint / Octopi plugin to control relays
aaronmussig/rq-dashboard-api
A bespoke version of RQ dashboard that is hyper-specific to my use case.
aaronmussig/rq-dashboard-web
aaronmussig/rq-sentinel-api
aaronmussig/rq-sentinel-web
aaronmussig/sarand
To extract AMR genes and their neighborhood
aaronmussig/test-action
aaronmussig/test-action2