Pinned Repositories
ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
BPCells
Scaling Single Cell Analysis to Millions of Cells
CellphoneDB
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
dataviz
A book covering the fundamentals of data visualization
GTEx-Networks
Tissue specific network for GTEx tissue data (TPM normalized).
IOBR
IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
Kassandra
Bostongene cell deconvolution algorithm from RNAseq
liger
R package for integrating and analyzing multiple single-cell datasets
LoomXpy
Python package (compatible with SCope) to create .loom files and extend them with other data e.g.: SCENIC regulons
SComatic
A tool for detecting somatic variants in single cell data
aaronwolf1995's Repositories
aaronwolf1995/IOBR
IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
aaronwolf1995/SComatic
A tool for detecting somatic variants in single cell data
aaronwolf1995/ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
aaronwolf1995/BPCells
Scaling Single Cell Analysis to Millions of Cells
aaronwolf1995/CellphoneDB
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
aaronwolf1995/dataviz
A book covering the fundamentals of data visualization
aaronwolf1995/GTEx-Networks
Tissue specific network for GTEx tissue data (TPM normalized).
aaronwolf1995/Kassandra
Bostongene cell deconvolution algorithm from RNAseq
aaronwolf1995/liger
R package for integrating and analyzing multiple single-cell datasets
aaronwolf1995/LoomXpy
Python package (compatible with SCope) to create .loom files and extend them with other data e.g.: SCENIC regulons
aaronwolf1995/MetaTiME
MetaTiME: Meta-components in Tumor immune MicroEnvironment
aaronwolf1995/NaRnEA
NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)
aaronwolf1995/NetBID
Data-driven Network-based Bayesian Inference of Drivers
aaronwolf1995/PISCES
R package for Protein activity analysis of single-cell RNAseq.
aaronwolf1995/pycistarget
pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence TF cistromes.
aaronwolf1995/R_study
aaronwolf1995/rstudio_cloud
My Rstudio cloud project.
aaronwolf1995/scRNA-seq_notes
A list of scRNA-seq analysis tools
aaronwolf1995/pycisTopic
pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
aaronwolf1995/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
aaronwolf1995/rstudio-server-conda
Run Rstudio Server in a conda environment
aaronwolf1995/scDART
aaronwolf1995/scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
aaronwolf1995/scriabin
Analysis of cell-cell communication at single-cell resolution
aaronwolf1995/seurat
R toolkit for single cell genomics
aaronwolf1995/seurat-data
Dataset distribution for Seurat
aaronwolf1995/SJARACNe
Scalable Tool for Gene Network Reverse Engineering
aaronwolf1995/WiNGPT2
WiNGPT是一个基于GPT的医疗垂直领域大模型，旨在将专业的医学知识、医疗信息、数据融会贯通，为医疗行业提供智能化的医疗问答、诊断支持和医学知识等信息服务，提高诊疗效率和医疗服务质量。