Pinned Repositories
aarthi31.github.io
Aarthi Ravikrishnan's website
analyzing_microbiome_timeseries
balance
An R package to visualize balances of compositional data without dendrograms
BEEM
BEEM: Estimating Lotka-Volterra models from time-course microbiome sequencing data
BEEM-static
BEEM-static: An R package for inferring microbial interactions based on Lotka-Volterra models
bioconda-recipes
Conda recipes for the bioconda channel.
bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
gutmicrobiome
Contains all the codes and the files required to generate the images in the paper titled "Unraveling microbial interactions in the gut microbiome"
metquest-1
Enumerating biosynthetic pathways in metabolic networks
MetQuest-OLD
Enumeration of biosynthetic pathways from metabolic networks
aarthi31's Repositories
aarthi31/metquest-1
Enumerating biosynthetic pathways in metabolic networks
aarthi31/gutmicrobiome
Contains all the codes and the files required to generate the images in the paper titled "Unraveling microbial interactions in the gut microbiome"
aarthi31/aarthi31.github.io
Aarthi Ravikrishnan's website
aarthi31/analyzing_microbiome_timeseries
aarthi31/balance
An R package to visualize balances of compositional data without dendrograms
aarthi31/bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
aarthi31/biolearn
Machine learning tools for biomarker analysis
aarthi31/BubbleCV
This is a professional CV template inspired by the legendary secret agent James Bond. BubbleCV is designed to effectively showcase your skills, work experience, education, and contact information in a sleek and impactful manner.
aarthi31/caret
caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models
aarthi31/chenlab-training
aarthi31/CODAinPractice
Compositional Data Analysis in Practice
aarthi31/drugs_bioaccumulation
aarthi31/fiber-fermented-study
aarthi31/FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
aarthi31/gneiss
compositional data analysis toolbox
aarthi31/Groningen-Microbiome
Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen
aarthi31/HELIUS
aarthi31/hospital_microbiome
aarthi31/Intel_SPR
aarthi31/Introduction_to_R
This repository contains the documentation, background material, scripts, and data for a tutorial on the Introduction to R. This introductory workshop is greared towards people with a interest/ background in geography and environmental science.
aarthi31/Jenior_RIPTiDe_2020
Repository associated with RIPTiDe publication
aarthi31/MAGBinning
Another MAG binning pipeline
aarthi31/MetaErgInstallHelper
A few scripts to help with the installation of MetaErg, the contig/bin annotation pipeline
aarthi31/metagenomeSeq
Statistical analysis for sparse high-throughput sequencing
aarthi31/panchangam
Computing the Indian calendar/panchangam and festivals using Swiss ephemeris
aarthi31/paper
Materials and Code for the micom manuscript.
aarthi31/Shotgun-Metagenomics-Analysis
Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
aarthi31/stag-mwc
StaG Metagenomic Workflow Collaboration
aarthi31/Topcuoglu_ML_mBio_2020
Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
aarthi31/training-collection
Collection of bioinformatics training materials