Please run SRA SRR11085797

Question

Please run SRA SRR11085797

Closed this issue 4 years ago · 4 comments

bioscienceresearch commented 4 years ago

NCBI SRA SRR11085797 contains sequence reads for RaTG13, the closest ancestor to SARS-CoV-2.

https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR11085797

As such it is an impotant CoV to study

Answer 1 · 2021-01-26T07:04:24.000Z

Hello, that sample has already been run: https://serratus.io/explorer?run=SRR11085797#result

You can visualize the data directly in JBrowse built into the website. Looks like it has RaTG13 as the online meta-data suggests.

Answer 2 · 2021-01-26T07:09:24.000Z

If you have a list of samples to process please keep it to one issue, compile the complete list and make sure it has not been run already by checking the website. Please do not open an issue per sample.

Answer 3 · 2021-01-26T07:37:33.000Z

Thanks, SRR11085797 must have been user error. As far as I can tell following hav not been run:

SRR12432009
SRR11806578

Answer 4 · 2021-01-26T07:42:38.000Z

Yep, I can slate those for processing but it might take a while before it trickles to the website. If you have an immediate use case I'll post the links to the raw data here once it's ready.

Edit: SRR11806578 is capillary sequencing, that is a tiny file you can view the output directly but it doesn't fit into our analysis pipeline.

Instrument: AB 310 Genetic Analyzer