sars-cov-2
There are 566 repositories under sars-cov-2 topic.
owid/covid-19-data
Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
soroushchehresa/awesome-coronavirus
🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)
neherlab/covid19_scenarios
Models of COVID-19 outbreak trajectories and hospital demand
nextstrain/ncov
Nextstrain build for novel coronavirus SARS-CoV-2
lindawangg/COVID-Net
COVID-Net Open Source Initiative
FoldingAtHome/coronavirus
Folding@home COVID-19 efforts
makers-for-life/makair
🫁 The world's first open-source ventilator tested on human patients. Mass-producible at a low cost (~2000€).
ryansmcgee/seirsplus
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
GuangchuangYu/nCov2019
query stats of infected coronavirus cases
je-suis-tm/graph-theory
Julia and Python complex system applications in ecology, epidemiology, sociology, economics & finance; network science models including Bianconi-Barabási, Barabási-Albert, Watts-Strogatz, Waxman Model & Erdős-Rényi; graph theory algorithms involving Gillespie, Bron Kerbosch, Ramsey, Bellman Ford, A*, Kruskal, Borůvka, Prim, Dijkstra, DSatur, Randomized Distributed, Vizing, Topological Sort, DFS, BFS
hodcroftlab/covariants
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
ababaian/serratus
Ultra-deep search for novel viruses
WeileiZeng/Open-Source-COVID-19
A global collection of Open Source projects during COVID-19
nextstrain/nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
CSSEGISandData/COVID-19_Unified-Dataset
Unified COVID-19 Dataset
robert-koch-institut/COVID-19-Impfungen_in_Deutschland
Gemäß Impfverordnung sind alle Impfdaten täglich dem Robert Koch Institut (RKI) zu melden. Die Impfkampagne wurde in ihrem Verlauf um immer weitere Leistungserbringer erweitert, für die mehrere Meldeportale eingerichtet wurden, die in diesem Dokument beschrieben werden.
rajeshrinet/pyross
PyRoss: inference, forecasts, and optimised control of epidemiological models in Python
cbg-ethz/V-pipe
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
kaushikjadhav01/COVID-19-Detection-Flask-App-based-on-Chest-X-rays-and-CT-Scans
COVID-19 Detection Chest X-rays and CT scans: COVID-19 Detection based on Chest X-rays and CT Scans using four Transfer Learning algorithms: VGG16, ResNet50, InceptionV3, Xception. The models were trained for 500 epochs on around 1000 Chest X-rays and around 750 CT Scan images on Google Colab GPU. A Flask App was later developed wherein user can upload Chest X-rays or CT Scans and get the output of possibility of COVID infection.
haydengunraj/COVIDNet-CT
COVID-Net Open Source Initiative - Models and Data for COVID-19 Detection in Chest CT
yatisht/usher
Ultrafast Sample Placement on Existing Trees
greenelab/covid19-review
A collaborative review of the emerging COVID-19 literature. Join the chat here:
nf-core/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
Project-Evidence/project-evidence.github.io
Evidence SARS-CoV-2 Emerged From a Biological Laboratory in Wuhan, China
OpenGene/fastv
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
neherlab/SARS-CoV-2_variant-reports
Informal summaries of notable SARS-CoV-2 lineages
ailabstw/social-distancing
A simple, decentralized. privacy-reserving contact tracing system
covid19-eu-zh/covid19-eu-data
Automated Data Collection: COVID-19/SARS-COV-2 Cases in EU by Country, State/Province/Local Authorities, and Date
urmi-21/COVID-19-RNA-Seq-datasets
A repository for sharing information on available COVID-19 RNA-Seq datasets
broadinstitute/pyro-cov
Pyro models of SARS-CoV-2 variants
robert-koch-institut/COVID-19-Hospitalisierungen_in_Deutschland
Im Datensatz 'COVID-19-Hospitalisierungen' werden die aktuellen Zahlen der nach den Vorgaben des Infektionsschutzgesetzes - IfSG - erfassten hospitalisierten COVID-19-Fälle bereitgestellt.
robert-koch-institut/SARS-CoV-2-Infektionen_in_Deutschland_Archiv
Der vorliegende Datansatz enthält umfassende Informationen zu SARS-CoV-2-Infektionen in Deutschland, die gemäß dem Infektionsschutzgesetze (IfSG) von den Gesundheitsämtern an das Robert Koch-Institut (RKI) gemeldet wurden. Die Daten umfassen Informationen zur Anzahl der bestätigten Fälle, Todesfälle und Genesungen.
robert-koch-institut/SARS-CoV-2-Nowcasting_und_-R-Schaetzung
Das Nowcasting erstellt eine Schätzung des Verlaufs der Anzahl von bereits erfolgten SARS-CoV-2-Erkrankungsfällen in Deutschland unter Berücksichtigung des Diagnose-, Melde- und Übermittlungsverzugs.
robert-koch-institut/SARS-CoV-2-Sequenzdaten_aus_Deutschland
Das Robert Koch-Institut stellt Systeme zur bundesweiten molekularen Surveillance des SARS-CoV-2-Virus bereit. Jedes Labor in Deutschland, das SARS-CoV-2 sequenziert, ist laut der Verordnung zur molekulargenetischen Surveillance des Coronavirus SARS-CoV-2 verpflichtet, dem Robert Koch-Institut die Sequenz- und zugehörige Metadaten zu übermitteln.
yijunwang0805/covid-19
COVID-19 infectious forecasting using SEIR model and R0 estimation
Wytamma/GISAIDR
Programmatically interact with the GISAID database.