Wytamma/GISAIDR

Issues

• GISAID blocking access

  #58 opened 3 months ago by TKMarkCheng
  1

• How can I download the data from EpiFlu database?

  #31 opened 2 years ago by virologist
  8

• Error in Matches

  #57 opened 5 months ago by rafischulman
  4

• Difference in metadata columns

  #27 opened 3 years ago by Wytamma
  4

• Request for conda package of GISAIDR

  #46 opened 2 years ago by ammaraziz
  1

• Fetching metadata with query and start_index can lead to duplicated records

  #37 opened 2 years ago by pvanheus
  0

• Download error: Error in send_request(method = "POST", data = data) : Server error!

  #55 opened 8 months ago by a-qvecell
  3

• Error "Subscript out of bounds" when login to the EpiFlu and EpiRSV

  #54 opened 8 months ago by augauga
  6

• cannot login

  #53 opened 10 months ago by dmontecino
  0

• add option to download sequencing technology metadata

  #52 opened a year ago by Wytamma
  0

• Error is prodcued if zero ids are returne from query and reauthentication is required

  #51 opened a year ago by ammaraziz
  2

• Download amino acid sequences for specified protein

  #49 opened a year ago by dawnmy
  2

• Error while downloading sequence for USA

  #48 opened 2 years ago by dawnmy
  3

• Is it possible to change the sequence header format

  #45 opened 2 years ago by dawnmy
  2

• Write test for export_fasta()

  #6 opened 2 years ago by Wytamma
  1

• tar: Removing leading `/' from member name

  #44 opened 2 years ago by NiklausMikaelson12138
  12

• Cannot access EpiRSV or EpiPox

  #43 opened 2 years ago by bernice-tw-chan
  2

• Support for searching by AA substitutions?

  #28 opened 2 years ago by tomwenseleers
  1

• Add accession to query

  #42 opened 2 years ago by Wytamma
  1

• Download returns strain names with spaces removed

  #41 opened 2 years ago by Wytamma
  0

• Difference between `load_all` and `total` arguments within `query` function

  #40 opened 2 years ago by BryanTegomoh
  6

• Login Error

  #38 opened 2 years ago by Danish-1311
  1

• Automatically split downloads in chunks for queries with >4000 records

  #29 opened 3 years ago by tomwenseleers
  1

• Misleading output when using query with location and nrows

  #36 opened 2 years ago by pvanheus
  3

• virus_name argument for query() and/or download() functions

  #32 opened 2 years ago by gdonovan1
  9

• select atleast one sequence!

  #35 opened 2 years ago by josenikhid97
  3

• No full installation docs for R noobs: `Error: ~/Library/Application Support/binman_chromedriver app directory not found.`

  #34 opened 2 years ago by corneliusroemer
  9

• Download full metadata without sequences

  #18 opened 3 years ago by Wytamma
  5

• bug: "internal server error" with download()

  #30 opened 2 years ago by brianhigh
  5

• Download GISAID metadata and/or sequence data via RSelenium?

  #26 opened 3 years ago by tomwenseleers
  2

• Failed to query info when the target infos is > 100000

  #20 opened 3 years ago by XINBADA426
  2

• Can data be downloaded more than 5000 sequences at a time ?

  #25 opened 3 years ago by josenikhid97
  2

• tests failing because rows_per_page broken on GISAID

  #21 opened 3 years ago by Wytamma
  3

• Only return 50 rows

  #24 opened 3 years ago by lujing-jlu
  4

• EpiCoV login error

  #23 opened 3 years ago by Wytamma
  2

• Could not login into GISAID database

  #22 opened 3 years ago by kusonahikari
  6

• tar.exe: Damaged tar archive

  #16 opened 3 years ago by Wytamma
  3

• login function not working in v0.7.4

  #19 opened 3 years ago by ai4pharma
  3

• lineage bug?

  #17 opened 3 years ago by Wytamma
  0

• Old GISAID accounts default to epiflu

  #13 opened 3 years ago by Wytamma
  1

• Login results in bad URL error message

  #15 opened 3 years ago by AmyMikhail
  8

• Please add "complete" "high coverage" and "collection date compl" to query

  #8 opened 3 years ago by sebastianduchene
  2

• Feature Requests: Location, Submitted Date etc

  #7 opened 3 years ago by gk7279
  1

• Updating versions not applied

  #11 opened 3 years ago by Wytamma
  0

• test for complete fails

  #12 opened 3 years ago by Wytamma
  2

• gisaid fasta downloader tryCatch error

  #10 opened 4 years ago by gk7279
  2

• Automatic type casting

  #2 opened 4 years ago by Wytamma
  0

• Extra comment in README

  #5 opened 4 years ago by Wytamma
  1

• Add download=TRUE to query

  #3 opened 4 years ago by Wytamma
  1

• Add advanced search

  #4 opened 4 years ago by Wytamma
  1