Pinned Repositories
1976
Visualisation of students killed by the police in 1976
1976_map_vue
Victims of the Apartheid state: 1976 map (current focus: Western Cape)
adjust_vcf
amplicon_schemes
count_constant_sites
cwltutorial
Examples to help in a Common Workflow Language tutorial
diamond_add_taxonomy
Tools for working with NCBI taxonomy database (and DIAMOND output)
lukasa
ncbitaxonomy
a Rust crate for working with a local copy of the NCBI Taxonomy database
parse_accessions
pvanheus's Repositories
pvanheus/artic-mpxv-illumina-nf
pvanheus/awesome-bioinformatics-education
resources for bioinformatics education
pvanheus/bactopia
A flexible pipeline for complete analysis of bacterial genomes
pvanheus/bioconda-recipes
Conda recipes for the bioconda channel.
pvanheus/BioschemasMarkupGenerator
A tool for prototyping markup against the Bioschemas profiles.
pvanheus/cgmlstorg_client
pvanheus/eastern_drc_meningitis
pvanheus/entero_scripts
pvanheus/fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
pvanheus/galaxy-mpxv-ont
pvanheus/ilifu-node-role
pvanheus/masters_galaxy_ansible2
pvanheus/message_processing
pvanheus/nanoseq
Nanopore demultiplexing, QC and alignment pipeline
pvanheus/nextstrain-marv-and-ravv
pvanheus/pathogen-genomics-march-2024
A course on Pathogen Bioinformatics
pvanheus/presidential-employment-stimulus
pvanheus/primaschema
Generate primer scheme bundles from a YAML and BED file
pvanheus/pubmlst_client
List and download schemes from pubMLST.org and other BIGSDB servers
pvanheus/qc_nextflow
pvanheus/sanbi-projects-service
pvanheus/sapporo-service
A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification.
pvanheus/short_course_training
pvanheus/squirrel
pvanheus/squirrel-nf
Interactive workflow to run squirrel
pvanheus/testconda
pvanheus/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
pvanheus/training-material
A collection of Galaxy-related training material
pvanheus/transanno
accurate LiftOver tool for new genome assemblies
pvanheus/ubinfie.github.io
µbinfie blog