Pinned Repositories
1976
Visualisation of students killed by the police in 1976
1976_map_vue
Victims of the Apartheid state: 1976 map (current focus: Western Cape)
adjust_vcf
amplicon_schemes
count_constant_sites
cwltutorial
Examples to help in a Common Workflow Language tutorial
diamond_add_taxonomy
Tools for working with NCBI taxonomy database (and DIAMOND output)
lukasa
ncbitaxonomy
a Rust crate for working with a local copy of the NCBI Taxonomy database
parse_accessions
pvanheus's Repositories
pvanheus/ncbitaxonomy
a Rust crate for working with a local copy of the NCBI Taxonomy database
pvanheus/bio-cwl-tools
CWL CommandLineTool descriptions for biology/life-sciences related applications
pvanheus/bitc2022_python
Jupyter notebooks from BITC2022 Python
pvanheus/can-street-map
pvanheus/combat-tb.github.io
COMBAT-TB Website
pvanheus/compare_annotation
pvanheus/downloadsdb
pvanheus/galaxytools
:microscope::books: Galaxy Tool wrappers
pvanheus/gff2neo
Loading H37Rv GFF data to Neo4j
pvanheus/GISAID_processing
pvanheus/iwc
Intergalactic Workflow Commission
pvanheus/masters_galaxy_ansible
Ansible playbooks for Galaxy servers used during Masters in Bioinformatics
pvanheus/multi-package-containers
Testing building mulled containers for multi-requirement tools.
pvanheus/muse
Molecular Upload Submission sErvice
pvanheus/nbdev_test
pvanheus/nextstrain-sudv
pvanheus/openVectorEditor
Teselagen's Open Source Vector/Plasmid Editor Component
pvanheus/pangolin
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
pvanheus/pathogen-genomics-package
This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates
pvanheus/planemo
Command-line utilities to assist in developing tools for the Galaxy Project.
pvanheus/planets
pvanheus/polio_report
Galaxy tools to work with poliovirus variation reporting pipeline
pvanheus/SARS-CoV-2-Contextual-Data-Specification
Collection template and associated materials for SARS-CoV-2 metadata
pvanheus/sqoosite
pvanheus/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
pvanheus/tools-devteam
Contains a set of Galaxy Tools mostly written by the Galaxy Team.
pvanheus/virusseq-api
pvanheus/virusseq-portal
Canadian VirusSeq Data Portal
pvanheus/workbench-toolbelt
Irida/Galaxy workbench related tasks automated. Galaxy & Irida server, management cli toolset
pvanheus/workbench-utils