/rcove

Primary LanguageRMIT LicenseMIT

rcove

The goal of rcove is to produce maps of dispersal area based on time series of ocean currents and simple life history characteristics in R. The current functionality supports in-water dispersal.

Installation

You can install rcove as a R package using two steps.

Step 1 Install the R package devtools

if (!require("devtools")) install.packages("devtools") # to install

Step 2 Install rcove

#install the package from *Github*

devtools::install_github("abalbar/rcove")

library(rcove) # load the library

Diagnostics

rcove.R

Create map of dispersal area.

-theta: Angle about which to rotate current velocities. Numeric

-velocity: Velocity time series. Vector consisting of two columns u,v.

-release_pts: Start locations for propagules. sf object

-PD: Planktonic propagule duration of species of interest. Numeric

-CPD: Competent propagule duration of species of interest. Numeric

-land: Land to be subtracted from final concatenated polygons. sf polygon

-proj: Projected crs in units m. -example: "+proj=utm +zone=20 +datum=NAD83 +units=m +no_defs"