Applied Bioinformatics Core @ Weill Cornell Medicine

Barbet2019

Code for processing of scRNA-seq and VDJ data for the manuscript of Barbet et al.

Cao_Epicardium

Scripts related to scRNA-seq data analysis

Chandran2021

Code and access to data related to the SIFT-seq publication by Chandran et al., Nature Medicine (2022)

CZI_MI_mouseZebrafish

Scripts for the analysis of scRNA-seq data of mouse and zebrafish

GeartySchietinger

Scripts related to bulkRNA-seq as well as single-cell CITE-seq and VDJ-seq data of Gearty et al. (2021)

Notaras_MolPsy

Code for the analysis of brain-organoid-derived single-cell RNA-seq data as published in Notaras et al., 2021

RubioNavarro_Pancreas

Scripts related to single-cell and bulk RNA-seq data of mouse pancreata as presented by Rubio-Navarro et al.

Rudloff2022

Scott2019

Code and data for the bulk RNA-seq and bulk ATAC-seq data of tumor-infiltrating CD8 T cells (and controls) as published in Scott et al., Nature (2019).

Shakiba2020

Code for the analyses of bulk RNA-seq and ATAC-seq presented in Shakiba et al., J Exp Med (2021)

abcwcm/GeartySchietinger

Scripts related to bulkRNA-seq as well as single-cell CITE-seq and VDJ-seq data of Gearty et al. (2021)

abcwcm/Rudloff2022

abcwcm/Notaras_MolPsy

Code for the analysis of brain-organoid-derived single-cell RNA-seq data as published in Notaras et al., 2021

abcwcm/Cao_Epicardium

Scripts related to scRNA-seq data analysis

abcwcm/RubioNavarro_Pancreas

Scripts related to single-cell and bulk RNA-seq data of mouse pancreata as presented by Rubio-Navarro et al.

abcwcm/Barbet2019

Code for processing of scRNA-seq and VDJ data for the manuscript of Barbet et al.

abcwcm/Chandran2021

Code and access to data related to the SIFT-seq publication by Chandran et al., Nature Medicine (2022)

abcwcm/CopertinoHODHbt

abcwcm/CZI_MI_mouseZebrafish

Scripts for the analysis of scRNA-seq data of mouse and zebrafish

abcwcm/Scott2019

Code and data for the bulk RNA-seq and bulk ATAC-seq data of tumor-infiltrating CD8 T cells (and controls) as published in Scott et al., Nature (2019).

abcwcm/Shakiba2020

Code for the analyses of bulk RNA-seq and ATAC-seq presented in Shakiba et al., J Exp Med (2021)

abcwcm/Battat_ileocolectomy

abcwcm/CovaxxHIV

Scripts and read counts for bulk RNA-seq

abcwcm/Espinosa-Carrasco2024

abcwcm/Hajjar2021_Blood

Analyses of amplicon-sequencing of the ANXA2 gene as published in Fassel et al., Blood (2021)

abcwcm/Klebanoff0606T1

SIFT-seq data for patient 0606T1

abcwcm/Klebanoff21LT2

SIFT-seq data for patient 21LT2

abcwcm/KlebanoffMR4050

SIFT-seq data for patient MR4050

abcwcm/piskounova_ribo

abcwcm/Regnier-Golanov2021

abcwcm/RenHIV

Scripts and data for the bulk RNA-seq analysis of HIV-infected CD4 T cells as published in Ren et al., J Virol (2021)

abcwcm/this-and-that

Collection of notes and scripts that may come in handy

abcwcm/Vartanian2023

abcwcm/Zhong2022