This project was published in Nature: Higher convergence of human-great ape enteric eukaryotic viromes in central African forest than in a European zoo: a One Health analysis
https://doi.org/10.1038/s41467-023-39455-9
Here is a set of simple scripts for analyzing metagenomic data from Miseq to obtain actionable results. They are designed to be run on Slurm compute clusters. Currently, these scripts can be executed using either of two methods.
### With conda :
trimmomatic/0.39
bbmap/39.00
bwa/0.7.17
seqtk/1.3
blast/2.12.0
megahit/1.2.9
kraken2/2.1.2
spades/3.15.5
library("phyloseq")
library("ggplot2")
library("RColorBrewer")
library("patchwork")
sbatsh script.sh {folder_input}
This project is licensed under the [License Name] - see the LICENSE.md file for details.
If you have any questions or comments about this project, you can reach us at [senhajirachikabdeljalil@gmail.com]