/LC-MODEL-PIPELINE

LCModel Pipeline for MRS using MATLAB

Primary LanguageMATLAB



MRS LC MODEL Pipeline

Pipeline for LCMODEL

“Automation applied to an inefficient operation will magnify the inefficiency.” – Bill Gates

BLOCK SCHEME

scheme

General Usage

This is the procedure that includes all of the steps

  • [FID_path,h2o_path]=importMRS(value) --0 for value means no h2o reference and 1 for the reference

  • [anonimyzed_path]=anonimyze(FID_path)--You have to perform this step seperately for each one

  • analyze(anonimyzed_path,varargin)--You can modulate all of the values of LC Model control file simply like following;

  • analyze(anonimyzed_path,'echot=45','ppmst=4.1','ppmend=0.2')-- It means that you manipulate the values of echo time, starting ppm and end ppm of the spectrum for more help see the function help.