Pinned Repositories
99problems
Playing with the 99 problems in a few languages
antimonial_2016
ApE
A Plasmid Editor
atb_emacs.d
my dotemacs.d tree
bacphlip-model-dev
hpgltools
A collection of R functions to aid in host-pathogen genomic research
LACHESIS
The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)
prfdb
Some scripts to search genomic data for significant secondary structures
ribosome_pymol
scripts to annotate ribosome pdb files
stampr
abelew's Repositories
abelew/ApE
A Plasmid Editor
abelew/hpgltools
A collection of R functions to aid in host-pathogen genomic research
abelew/CYOA
abelew/stampr
abelew/atb_emacs.d
my dotemacs.d tree
abelew/BBQ
BBQ = Bacterial Burden Quantification
abelew/CL_biopsies_Colombia
container recipe to perform analyses examining cutaneous leishmania biopsies with CIDEIM published approximately 202310
abelew/clinical_strains_lpanamensis
singularity container comprising the comparison of some clinical strains
abelew/cure_fail_host_analyses
Container recipe for repeating the L.panamensis cure/fail analyses in the host.
abelew/dantools
Utilities to compare disparate genomes
abelew/emacs
Mirror of GNU Emacs
abelew/epe
abelew/EPr2
abelew/error_rate_quantification
abelew/errrt
Quantifying RT error rates
abelew/EuPathDB
EuPathDB recipe for the Bioconductor AnnotationHub
abelew/fiji_tracker
Small package to track and quantify cells in fiji
abelew/hpgldata
Data used when running the hpgltools test suite.
abelew/hpgltools_singularity
abelew/knitr
A general-purpose tool for dynamic report generation in R
abelew/macrophage_response_lpanamensis
singularity container comprising analyses of macrophages infected with Leishmania panamensis.
abelew/OrthoFinder
Phylogenetic orthology inference for comparative genomics
abelew/perlweeklychallenge-club
Knowledge base for The Weekly Challenge club members using Perl, Raku, Ada, APL, Awk, Bash, BASIC, Bc, Befunge-93, Bourne Shell, BQN, Brainfuck, C3, C, CESIL, C++, C#, Clojure, COBOL, Coconut, Crystal, D, Dart, Dc, Elm, Emacs Lisp, Erlang, Excel VBA, Fennel, Fish, Forth, Fortran, Gembase, GNAT, Go, Haskell, Haxe, HTML, Idris, IO, J, Janet, Java, Ja
abelew/Rerrrt
R interface to the data from errrt
abelew/rnaseq_kajal_2020
abelew/Roary
Rapid large-scale prokaryote pan genome analysis
abelew/stampr_rtisan
Code for reproducing data from STAMPR experiments
abelew/sze
sze
abelew/transit
Repository for the TRANSIT and TPP tools developed by the Ioerger Lab
abelew/utr_analysis
Pipeline for determining the 5'UTR spliced leader and 3'UTR poly-A acceptor sites in a collection of RNA-Seq reads