Pinned Repositories
AnA-FiTS
The Ancestry-Aware Forward-in-Time Simulator
Catch2
A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later (or C++03 on the Catch1.x branch)
concat-aln
a little c++11 program to concatenate a number of alignments (fasta-format) into a phylip-format file; also produces a raxml-partition file
count-char
c++ program for counting characters in a file as efficiently as possible
emacs-config
exabayes
new official exabayes repository
heatmap-with-likelihoods
This is a modification of the R heatmap.2 to display RF distances between trees and relative likelihoods at the same time
mpi-seq-mock
a mock mpi compiler that creates a sequential executable from MPI code
RogueNaRok
A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf stability index and taxonomic instability index
Roguenarok_Webserver
aberer's Repositories
aberer/RogueNaRok
A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf stability index and taxonomic instability index
aberer/exabayes
new official exabayes repository
aberer/heatmap-with-likelihoods
This is a modification of the R heatmap.2 to display RF distances between trees and relative likelihoods at the same time
aberer/AnA-FiTS
The Ancestry-Aware Forward-in-Time Simulator
aberer/concat-aln
a little c++11 program to concatenate a number of alignments (fasta-format) into a phylip-format file; also produces a raxml-partition file
aberer/mpi-seq-mock
a mock mpi compiler that creates a sequential executable from MPI code
aberer/Roguenarok_Webserver
aberer/Catch2
A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later (or C++03 on the Catch1.x branch)
aberer/count-char
c++ program for counting characters in a file as efficiently as possible
aberer/emacs-config
aberer/ExaML
Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI
aberer/exercises
competitive programming exercises
aberer/grayifypdf
recreates a pdf with a defined set of color pages
aberer/passwenger
Password generator similar to DiceWare. Optimized for entropy per character.
aberer/simple-sim-msa
a simple and not necessarily biologically meaningful generator for multiple sequence alignments
aberer/squiggle
aberer/tree
a generic implementation of a directed tree
aberer/TreePress