abhinavhinger12/splicing

Code for analysing genome sequences and Annotation to predicting Alternative splicing

Jupyter Notebook

splicing

Research and Code for analysing Genome Sequences and Annotation to predict Splice Sites using Deep Neural Networks.

TODO

Create a Character Level RNN with Pytorch Karpathy
Data Preparation from Intron data and fasta files
Multi Label Classification of Splice Sites with input as 80 characters around the donor or acceptor and ouput as Bins or Splice Sites

Resources To Read

Using DNA Sequences on input to Models Denoising DNA Sequences-Medium
Understanging Genomic Language Paper RNN for Genome
Missing DNA DNA-LSTM