wrong format of all_alignments_*.tsv file in contigs_reports

[LuJiansen]

Hi,
it looks like the tsv format of all_alignments_*.tsv file in contigs_reports is wrong, as below:

$ head all_alignments_scaffolds_FINAL.tsv | cat -A
S1^IE1^IS2^IE2^IReference^IContig^IIDY^IAmbiguous^IBest_group$
115297652^I115395629^I57^I98004^Ichr5^Iscaffold_1^I99.75^I^ITrue$
indel: indel (> 5bp)$
115404026^I115421305^I106323^I123581^Ichr5^Iscaffold_1^I99.66^I^ITrue$
local misassembly$

there are two tabs bewteen IDY and Ambiguous column and a wrong EndOfLine after Ambiguous column, except the header

[LuJiansen]

sorry for my misunderstanding of this file ....
But if anyone want to just extract the alignment location of each contig blocks like me, you may use this command:

cat <(head -n 1 all_alignments_file.tsv | awk '{print $1,$2,$3,$4,$5,$6,$7,$8}' OFS='\t') <(sed 1d all_alignments_file.tsv | grep ^[1-9] | sed 's/\t\t/\t/g')