aboffin
A carbon-based life form studying microscopic carbon-based life forms using silicon-based, non-quantum computers.
UNLV, INRA, UMNMinnesota
Pinned Repositories
angst
Analyzer of Gene and Species Trees
anvio
An analysis and visualization platform for 'omics data
biogo
biogo is a bioinformatics library for Go
BLCA
BURST
An ultrafast optimal aligner for mapping large NGS data to large genome databases.
DAS_Tool
DAS Tool
dotfiles
XMonad, acme plumb configuration files (OpenBSD/Slackware)
drep
Rapid comparison and dereplication of genomes
eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
examples
example applications built using bíogo
aboffin's Repositories
aboffin/anvio
An analysis and visualization platform for 'omics data
aboffin/BLCA
aboffin/BURST
An ultrafast optimal aligner for mapping large NGS data to large genome databases.
aboffin/DAS_Tool
DAS Tool
aboffin/dotfiles
XMonad, acme plumb configuration files (OpenBSD/Slackware)
aboffin/drep
Rapid comparison and dereplication of genomes
aboffin/examples
example applications built using bíogo
aboffin/Gleesso_Pipeline
Inference of co-abundance graph for metagenomic species
aboffin/gt-pro
aboffin/krakenuniq
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
aboffin/MLRepo
aboffin/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
aboffin/mothur
Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
aboffin/mothur.github.io
wiki for the mothur software package
aboffin/ONEcode
1-code framework: docs, C-library, and tools
aboffin/org-transclusion
Emacs package to enable transclusion with Org Mode
aboffin/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
aboffin/phyloseq-extended
Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" provided by the platforms Migale and Genotoul
aboffin/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
aboffin/Ragout
Chromosome-level scaffolding using multiple references
aboffin/Rarefaction
Rarefaction scripts
aboffin/ReSeq
More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
aboffin/RGAAT_v2
Add multiple thread function for genome comparison
aboffin/SCORE
SCORE - a consensus tool for detecting differentially expressed genes in bacteria
aboffin/SequenceTools
Programs used in the lab for various tasks
aboffin/simka
Simka is a comparative metagenomics method dedicated to NGS datasets.
aboffin/simuscop
a novel next-generation sequencing simulator using position and genomic contexts based error profiles
aboffin/trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
aboffin/wgsim
Reads simulator
aboffin/wtdbg2
A fuzzy Bruijn graph approach to long noisy reads assembly